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Kcr_0859 delta TM from Korarchaeum cryptofilum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 294 100 mM sodium cacodylate pH 6.5, 30% MPD, 5% PEG 2000
Crystal Properties Matthews coefficient Solvent content 2.54 51.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 197.52 α = 90 b = 48.88 β = 90 c = 51.06 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2012-10-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.97895 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.19 39.3 99 0.086 0.998 9.23 3.4 26105
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.19 2.32 95.7 0.585 0.798 1.74 3.27
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.19 39.3 24806 1299 99.39 0.24417 0.24262 0.2459 0.27331 0.2743 RANDOM 48.116
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2 2.28 -4.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.868 r_dihedral_angle_4_deg 17.457 r_dihedral_angle_3_deg 15.209 r_long_range_B_refined 4.41 r_long_range_B_other 4.385 r_dihedral_angle_1_deg 3.899 r_scangle_other 2.514 r_mcangle_it 1.599 r_mcangle_other 1.598 r_scbond_it 1.545
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.868 r_dihedral_angle_4_deg 17.457 r_dihedral_angle_3_deg 15.209 r_long_range_B_refined 4.41 r_long_range_B_other 4.385 r_dihedral_angle_1_deg 3.899 r_scangle_other 2.514 r_mcangle_it 1.599 r_mcangle_other 1.598 r_scbond_it 1.545 r_scbond_other 1.544 r_angle_other_deg 1.099 r_angle_refined_deg 1.036 r_mcbond_it 0.992 r_mcbond_other 0.988 r_chiral_restr 0.05 r_bond_refined_d 0.007 r_bond_other_d 0.004 r_gen_planes_refined 0.004 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3102 Nucleic Acid Atoms Solvent Atoms 121 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling SHELXDE phasing