Solution structure of lipase binding domain LID1 of foldase from Pseudomonas aeruginosa
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 530 uM [U-13C; U-15N] Lipase-interaction domain 1 | 90% H2O/10% D2O | 20 mM | 7.4 | 1 atm | 303 | Bruker AVANCE III 600 |
| 2 | 2D 1H-13C HSQC | 530 uM [U-13C; U-15N] Lipase-interaction domain 1 | 90% H2O/10% D2O | 20 mM | 7.4 | 1 atm | 303 | Bruker AVANCE III 600 |
| 3 | 3D HN(CA)CO | 530 uM [U-13C; U-15N] Lipase-interaction domain 1 | 90% H2O/10% D2O | 20 mM | 7.4 | 1 atm | 303 | Bruker AVANCE III 600 |
| 4 | 3D HNCACB | 530 uM [U-13C; U-15N] Lipase-interaction domain 1 | 90% H2O/10% D2O | 20 mM | 7.4 | 1 atm | 303 | Bruker AVANCE III 600 |
| 5 | 3D HCCH-TOCSY | 530 uM [U-13C; U-15N] Lipase-interaction domain 1 | 90% H2O/10% D2O | 20 mM | 7.4 | 1 atm | 303 | Bruker AVANCE III 600 |
| 6 | 3D 1H-15N NOESY | 530 uM [U-13C; U-15N] Lipase-interaction domain 1 | 90% H2O/10% D2O | 20 mM | 7.4 | 1 atm | 303 | Bruker AVANCE III 600 |
| 7 | 3D 1H-13C NOESY | 530 uM [U-13C; U-15N] Lipase-interaction domain 1 | 90% H2O/10% D2O | 20 mM | 7.4 | 1 atm | 303 | Bruker AVANCE III 600 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE III | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics | Amber | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 20 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (closest to the average) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | collection | TopSpin | Bruker Biospin | |
| 2 | processing | TopSpin | Bruker Biospin | |
| 3 | chemical shift assignment | CARA | Keller and Wuthrich | |
| 4 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
| 5 | geometry optimization | Amber | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman | |
| 6 | data analysis | TopSpin | Bruker Biospin | |
| 7 | refinement | Amber | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman | |
| 8 | peak picking | CARA | Keller and Wuthrich | |
