6GSF

Solution structure of lipase binding domain LID1 of foldase from Pseudomonas aeruginosa


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC530 uM [U-13C; U-15N] Lipase-interaction domain 190% H2O/10% D2O20 mM7.41 atm303Bruker AVANCE III 600
22D 1H-13C HSQC530 uM [U-13C; U-15N] Lipase-interaction domain 190% H2O/10% D2O20 mM7.41 atm303Bruker AVANCE III 600
33D HN(CA)CO530 uM [U-13C; U-15N] Lipase-interaction domain 190% H2O/10% D2O20 mM7.41 atm303Bruker AVANCE III 600
43D HNCACB530 uM [U-13C; U-15N] Lipase-interaction domain 190% H2O/10% D2O20 mM7.41 atm303Bruker AVANCE III 600
53D HCCH-TOCSY530 uM [U-13C; U-15N] Lipase-interaction domain 190% H2O/10% D2O20 mM7.41 atm303Bruker AVANCE III 600
63D 1H-15N NOESY530 uM [U-13C; U-15N] Lipase-interaction domain 190% H2O/10% D2O20 mM7.41 atm303Bruker AVANCE III 600
73D 1H-13C NOESY530 uM [U-13C; U-15N] Lipase-interaction domain 190% H2O/10% D2O20 mM7.41 atm303Bruker AVANCE III 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III600
NMR Refinement
MethodDetailsSoftware
molecular dynamicsAmber
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number20
Conformers Submitted Total Number20
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpinBruker Biospin
2processingTopSpinBruker Biospin
3chemical shift assignmentCARAKeller and Wuthrich
4structure calculationCYANAGuntert, Mumenthaler and Wuthrich
5geometry optimizationAmberCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
6data analysisTopSpinBruker Biospin
7refinementAmberCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
8peak pickingCARAKeller and Wuthrich