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Crystal structure of the ferric enterobactin esterase (pfeE) mutant(S157A) from Pseudomonas aeruginosa in presence of enterobactin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 294 PEG MME 2000, Sodium acetate, potassium nitrate
Crystal Properties Matthews coefficient Solvent content 2.39 48.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.55 α = 90 b = 76.43 β = 90 c = 130.67 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2017-04-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9686 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.66 58.55 100 0.1291 0.998 11.6 12.61 70084
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.66 1.69 99.9 1.9 0.525 1.1 7.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.66 58.55 66478 3528 99.97 0.17634 0.17484 0.188 0.20497 0.2087 RANDOM 37.02
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.28 0.16 -2.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.773 r_dihedral_angle_4_deg 16.84 r_dihedral_angle_3_deg 13.871 r_long_range_B_other 8.999 r_long_range_B_refined 8.996 r_scangle_other 7.534 r_dihedral_angle_1_deg 6.514 r_scbond_other 5.139 r_scbond_it 5.138 r_mcangle_it 4.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.773 r_dihedral_angle_4_deg 16.84 r_dihedral_angle_3_deg 13.871 r_long_range_B_other 8.999 r_long_range_B_refined 8.996 r_scangle_other 7.534 r_dihedral_angle_1_deg 6.514 r_scbond_other 5.139 r_scbond_it 5.138 r_mcangle_it 4.95 r_mcangle_other 4.949 r_mcbond_it 3.709 r_mcbond_other 3.704 r_angle_refined_deg 1.34 r_angle_other_deg 0.768 r_chiral_restr 0.197 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4030 Nucleic Acid Atoms Solvent Atoms 254 Heterogen Atoms 95
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing