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X-ray structure of M-21 protein complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 The crystallisation plate was incluabed in 20 degree celcius for crystal growth. The reservoir had 500 micro litre of 20% PEG-MME 2000, 0.1M TRis (pH 8.5), 0.2M trimethylamine N-oxide. The 2microlitre protein-peptide sample was mixed with 1ul of reservoir solution and placed in the cover slip for hanging drop set up
Crystal Properties Matthews coefficient Solvent content 2.32 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.555 α = 90 b = 116.524 β = 90 c = 72.63 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-01-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.987 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.42 74.35 100 0.15 0.16 0.06 0.9 9.5 12.6 32012 45.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.42 2.48 98.6 0.95 1 0.39 0.5 2.2 13
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.42 74.35 29906 1498 98.16 0.22282 0.21986 0.28035 0.2515 RANDOM 57.935
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.51 0.96 2.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.67 r_dihedral_angle_3_deg 20.847 r_dihedral_angle_4_deg 17.866 r_long_range_B_refined 11.816 r_mcangle_it 6.919 r_dihedral_angle_1_deg 6.545 r_scbond_it 5.595 r_mcbond_it 4.464 r_angle_refined_deg 1.729 r_chiral_restr 0.124
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.67 r_dihedral_angle_3_deg 20.847 r_dihedral_angle_4_deg 17.866 r_long_range_B_refined 11.816 r_mcangle_it 6.919 r_dihedral_angle_1_deg 6.545 r_scbond_it 5.595 r_mcbond_it 4.464 r_angle_refined_deg 1.729 r_chiral_restr 0.124 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5790 Nucleic Acid Atoms Solvent Atoms 229 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing