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Solution structure of the RING domain of the E3 ubiquitin ligase HRD1
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-15N NOESY 0.8 mM [U-98% 13C; U-98% 15N] E3 ubiquitin ligase Hrd1 95% H2O/5% D2O 150 mM 7.0 AMBIENT bar 303 Bruker AVANCE 950 2 3D 1H-13C NOESY aliphatic 0.8 mM [U-98% 13C; U-98% 15N] E3 ubiquitin ligase Hrd1 95% H2O/5% D2O 150 mM 7.0 AMBIENT bar 303 Bruker AVANCE 950 3 3D 1H-13C NOESY aromatic 0.8 mM [U-98% 13C; U-98% 15N] E3 ubiquitin ligase Hrd1 95% H2O/5% D2O 150 mM 7.0 AMBIENT bar 303 Bruker AVANCE 700 4 3D HNCACB 0.8 mM [U-98% 13C; U-98% 15N] E3 ubiquitin ligase Hrd1 95% H2O/5% D2O 150 mM 7.0 AMBIENT bar 303 Bruker AVANCE 700 7 2D 1H-15N HSQC 0.8 mM [U-98% 13C; U-98% 15N] E3 ubiquitin ligase Hrd1 95% H2O/5% D2O 150 mM 7.0 AMBIENT bar 303 Bruker AVANCE 700 6 2D 1H-13C HSQC aliphatic 0.8 mM [U-98% 13C; U-98% 15N] E3 ubiquitin ligase Hrd1 95% H2O/5% D2O 150 mM 7.0 AMBIENT bar 303 Bruker AVANCE 700 5 2D 1H-13C HSQC aromatic 0.8 mM [U-98% 13C; U-98% 15N] E3 ubiquitin ligase Hrd1 95% H2O/5% D2O 150 mM 7.0 AMBIENT bar 303 Bruker AVANCE 700 8 3D 1H TOCSY 0.8 mM [U-98% 13C; U-98% 15N] E3 ubiquitin ligase Hrd1 95% H2O/5% D2O 150 mM 7.0 AMBIENT bar 303 Bruker AVANCE 700 10 3D HNCO 0.8 mM [U-98% 13C; U-98% 15N] E3 ubiquitin ligase Hrd1 95% H2O/5% D2O 150 mM 7.0 AMBIENT bar 303 Bruker AVANCE 700 9 3D HNCACO 0.8 mM [U-98% 13C; U-98% 15N] E3 ubiquitin ligase Hrd1 95% H2O/5% D2O 150 mM 7.0 AMBIENT bar 303 Bruker AVANCE 700 11 3D HN(COCA)CB 0.8 mM [U-98% 13C; U-98% 15N] E3 ubiquitin ligase Hrd1 95% H2O/5% D2O 150 mM 7.0 AMBIENT bar 303 Bruker AVANCE 700 12 2D HCBCGCDH TOCSY 0.8 mM [U-98% 13C; U-98% 15N] E3 ubiquitin ligase Hrd1 95% H2O/5% D2O 150 mM 7.0 AMBIENT bar 303 Bruker AVANCE 700
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 3 Bruker AVANCE 700 4 Bruker AVANCE 950
NMR Refinement Method Details Software torsion angle dynamics Zinc included CYANA
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (target function)
Computation: NMR Software # Classification Version Software Name Author 2 chemical shift assignment Sparky 3.13 Goddard 1 structure calculation CYANA 3.9 Peter Guntert 3 refinement OPAL Luginbuhl, Guntert, Billeter and Wuthrich