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Artificial imine reductase mutant S112A-N118P-K121A-S122M
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2QCB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 295 2.0 M ammonium sulfate, 0.1 M sodium acetate, pH 4.0
Crystal Properties Matthews coefficient Solvent content 2.23 44.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.801 α = 90 b = 57.801 β = 90 c = 178.273 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2017-05-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.0000 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.78 55 99.9 0.19 18.7 25.4 15084
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.91 1.96 97.6 1.098 0.88 1.5 7.1 816
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2QCB 1.78 54.98 14300 761 99.84 0.19524 0.19438 0.2017 0.21126 0.2206 RANDOM 50.71
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.32 -2.32 4.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.317 r_dihedral_angle_4_deg 23.229 r_dihedral_angle_3_deg 15.612 r_long_range_B_refined 13.114 r_long_range_B_other 13.08 r_mcangle_it 8.482 r_mcangle_other 8.475 r_scangle_other 8.254 r_dihedral_angle_1_deg 7.662 r_scbond_it 5.705
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.317 r_dihedral_angle_4_deg 23.229 r_dihedral_angle_3_deg 15.612 r_long_range_B_refined 13.114 r_long_range_B_other 13.08 r_mcangle_it 8.482 r_mcangle_other 8.475 r_scangle_other 8.254 r_dihedral_angle_1_deg 7.662 r_scbond_it 5.705 r_scbond_other 5.622 r_mcbond_it 5.531 r_mcbond_other 5.506 r_angle_refined_deg 2.073 r_angle_other_deg 1.044 r_chiral_restr 0.122 r_bond_refined_d 0.022 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 926 Nucleic Acid Atoms Solvent Atoms 29 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing