6E6O

Pheromone from Euplotes raikovi, Er-1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP3.52900.1 M to 0.2 M (NH4)2SO4, 0.05 M Na Citrate pH 3.5 and 6% (v/v) ethanol, using 5-ul protein drops and 5 ul of reservoir solution
Crystal Properties
Matthews coefficientSolvent content
1.4716.31

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.44α = 90
b = 22.56β = 110.57
c = 23.01γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2015-02-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.6192SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
10.725.02970.095030.9999.4112.339777
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
10.70.7251.630.447

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONAB INITIO PHASINGTHROUGHOUT0.725.0237789198998.010.166320.16540.18445RANDOM7.895
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.18-0.480.430.09
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg26.841
r_sphericity_free16.28
r_dihedral_angle_3_deg13.411
r_dihedral_angle_4_deg13.013
r_dihedral_angle_1_deg7.38
r_sphericity_bonded6.312
r_rigid_bond_restr4.383
r_angle_refined_deg2.682
r_long_range_B_refined2.463
r_long_range_B_other2.463
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg26.841
r_sphericity_free16.28
r_dihedral_angle_3_deg13.411
r_dihedral_angle_4_deg13.013
r_dihedral_angle_1_deg7.38
r_sphericity_bonded6.312
r_rigid_bond_restr4.383
r_angle_refined_deg2.682
r_long_range_B_refined2.463
r_long_range_B_other2.463
r_scangle_other2.051
r_mcangle_it1.873
r_mcangle_other1.869
r_scbond_it1.559
r_scbond_other1.556
r_angle_other_deg1.528
r_mcbond_it1.269
r_mcbond_other1.253
r_chiral_restr0.119
r_bond_refined_d0.025
r_gen_planes_refined0.016
r_bond_other_d0.004
r_gen_planes_other0.003
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms303
Nucleic Acid Atoms
Solvent Atoms22
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
SHELXphasing