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Fusion surface structure, function, and dynamics of gamete fusogen HAP2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5MF1 PDB entry 5MF1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298.15 26% PEG3350, 0.1 M HEPES, pH 7.5, 0.35 M ammonium acetate
Crystal Properties Matthews coefficient Solvent content 3.1 60.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 198.22 α = 90 b = 117.6 β = 123.79 c = 115.21 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 130 mm GM/CA 2017-03-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 1.071951 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 97.3 0.095 0.999 9.4 4.7 66071
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.67 85.8 3.559 0.16 0.33 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE PDB entry 5MF1 2.602 48.995 1.33 65203 1827 96.67 0.2383 0.2372 0.2392 0.2757 0.2759
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 12.214 f_angle_d 0.528 f_chiral_restr 0.039 f_plane_restr 0.005 f_bond_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11615 Nucleic Acid Atoms Solvent Atoms 95 Heterogen Atoms 265
Software Software Software Name Purpose PHENIX refinement Blu-Ice data collection Coot model building AutoSol phasing XDS data reduction XSCALE data scaling