6D6X
HSP40 co-chaperone Sis1 J-domain
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 220 uM [U-13C; U-15N] Sis1 1-81 | 90% H2O/10% D2O | 200 mM | 7.5 | 1 atm | 303 | Bruker DRX 600 |
7 | 2D 1H-13C HSQC | 220 uM [U-13C; U-15N] Sis1 1-81 | 90% H2O/10% D2O | 200 mM | 7.5 | 1 atm | 303 | Bruker DRX 600 |
2 | 3D HNCACB | 220 uM [U-13C; U-15N] Sis1 1-81 | 90% H2O/10% D2O | 200 mM | 7.5 | 1 atm | 303 | Bruker DRX 600 |
3 | 3D CBCA(CO)NH | 220 uM [U-13C; U-15N] Sis1 1-81 | 90% H2O/10% D2O | 200 mM | 7.5 | 1 atm | 303 | Bruker DRX 600 |
4 | 3D HNCO | 220 uM [U-13C; U-15N] Sis1 1-81 | 90% H2O/10% D2O | 200 mM | 7.5 | 1 atm | 303 | Bruker DRX 600 |
5 | 3D HN(CO)CA | 220 uM [U-13C; U-15N] Sis1 1-81 | 90% H2O/10% D2O | 200 mM | 7.5 | 1 atm | 303 | Bruker DRX 600 |
6 | 3D HCCH-TOCSY | 220 uM [U-13C; U-15N] Sis1 1-81 | 90% H2O/10% D2O | 200 mM | 7.5 | 1 atm | 303 | Bruker DRX 600 |
8 | 3D 1H-15N NOESY | 200 uM [U-15N] Sis1 1-81 | 90% H2O/10% D2O | 200 mM | 7.5 | 1 atm | 303 | Bruker AVANCE III 800 |
9 | 3D 1H-13C NOESY | 220 uM [U-13C; U-15N] Sis1 1-81 | 90% H2O/10% D2O | 200 mM | 7.5 | 1 atm | 303 | Bruker AVANCE III 800 |
10 | 3D HBHA(CO)NH | 220 uM [U-13C; U-15N] Sis1 1-81 | 90% H2O/10% D2O | 200 mM | 7.5 | 1 atm | 303 | Bruker DRX 600 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
2 | Bruker | AVANCE III | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
de novo | de novo protein structure calculation based on chemical shift | CS-ROSETTA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 50000 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | chemical shift assignment | Analysis | CCPN | |
3 | data analysis | Analysis | CCPN | |
4 | peak picking | Analysis | CCPN | |
5 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
6 | structure calculation | CS-ROSETTA | Shen, Vernon, Baker and Bax | |
7 | refinement | CS-ROSETTA | Shen, Vernon, Baker and Bax |