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Crystal structure of HsNUDT16 in complex with diADPR (soaked)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 9.5 293 PEG 8000, CHES
Crystal Properties Matthews coefficient Solvent content 2.25 45.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.395 α = 90 b = 47.063 β = 108.74 c = 75.792 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 200K 2016-12-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ DW 1.5417
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 60 91.4 0.167 0.214 0.131 6 2.2 6140
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.26 95.5 0.592 0.759 0.469 0.51 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.2 37.62 5564 283 90.82 0.2566 0.2555 0.2557 0.2791 0.2777 RANDOM 50.797
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.21 1.58 -2.15 5.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.818 r_dihedral_angle_4_deg 17.262 r_dihedral_angle_3_deg 16.479 r_dihedral_angle_1_deg 6.772 r_angle_refined_deg 1.842 r_angle_other_deg 1.464 r_chiral_restr 0.09 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.818 r_dihedral_angle_4_deg 17.262 r_dihedral_angle_3_deg 16.479 r_dihedral_angle_1_deg 6.772 r_angle_refined_deg 1.842 r_angle_other_deg 1.464 r_chiral_restr 0.09 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2740 Nucleic Acid Atoms Solvent Atoms 3 Heterogen Atoms 131
Software Software Software Name Purpose REFMAC refinement StructureStudio data collection SCALEPACK data scaling PDB_EXTRACT data extraction Coot model building HKL-3000 data reduction MOLREP phasing