6ZRM | pdb_00006zrm

G-quadruplex with a G-A bulge

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-1H NOESY	0.6 mM / DNA (5'-D(*TP*GP*GP*GP*AP*GP*GP*GP*AP*GP*CP*GP*GP*GP*AP*GP*TP*GP*GP*G)-3')	90% H2O/10% D2O	70 mM	7	1 atm	298	Agilent VNMRS 600
2	2D 1H-1H NOESY	0.6 mM / DNA (5'-D(*TP*GP*GP*GP*AP*GP*GP*GP*AP*GP*CP*GP*GP*GP*AP*GP*TP*GP*GP*G)-3')	90% H2O/10% D2O	70 mM	7	1 atm	298	Agilent VNMRS 800
3	2D 1H-1H NOESY	0.6 mM / DNA (5'-D(*TP*GP*GP*GP*AP*GP*GP*GP*AP*GP*CP*GP*GP*GP*AP*GP*TP*GP*GP*G)-3')	100% D2O	70 mM	7	1 atm	298	Agilent VNMRS 600
4	2D 1H-1H NOESY	0.6 mM / DNA (5'-D(*TP*GP*GP*GP*AP*GP*GP*GP*AP*GP*CP*GP*GP*GP*AP*GP*TP*GP*GP*G)-3')	100% D2O	70 mM	7	1 atm	298	Agilent VNMRS 800
5	2D 1H-1H TOCSY	0.6 mM / DNA (5'-D(*TP*GP*GP*GP*AP*GP*GP*GP*AP*GP*CP*GP*GP*GP*AP*GP*TP*GP*GP*G)-3')	100% D2O	70 mM	7	1 atm	298	Agilent VNMRS 600
6	2D DQF-COSY	0.6 mM / DNA (5'-D(*TP*GP*GP*GP*AP*GP*GP*GP*AP*GP*CP*GP*GP*GP*AP*GP*TP*GP*GP*G)-3')	100% D2O	70 mM	7	1 atm	298	Agilent VNMRS 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Agilent	VNMRS	600
2	Agilent	VNMRS	800

NMR Refinement
Method	Details	Software
simulated annealing		Amber

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	Sparky		Goddard
2	structure calculation	Amber		Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
3	refinement	Amber		Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
4	processing	VNMR		Varian