6ZGL

Structure of DPS determined by movement-free cryoEM with zero dose extrapolation


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.875
r_dihedral_angle_4_deg20.239
r_dihedral_angle_3_deg17.204
r_long_range_B_other15.439
r_long_range_B_refined15.437
r_scangle_other9.16
r_scbond_it5.708
r_scbond_other5.701
r_mcangle_other3.538
r_mcangle_it3.534
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.875
r_dihedral_angle_4_deg20.239
r_dihedral_angle_3_deg17.204
r_long_range_B_other15.439
r_long_range_B_refined15.437
r_scangle_other9.16
r_scbond_it5.708
r_scbond_other5.701
r_mcangle_other3.538
r_mcangle_it3.534
r_dihedral_angle_1_deg3.478
r_mcbond_it2.389
r_angle_other_deg2.388
r_mcbond_other2.375
r_angle_refined_deg1.937
r_chiral_restr0.117
r_bond_other_d0.036
r_gen_planes_other0.026
r_bond_refined_d0.018
r_gen_planes_refined0.009
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
DNA protection during starvation protein (DPS)
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification Instrument
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles275623
Reported Resolution (Å)1.9
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Point SymmetryT
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeFEI FALCON IV (4k x 4k)
Electron Dose (electrons/Å**2)35
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)
Maximum Defocus (nm)
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION