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HtrA1 inactive protease domain S328A with CARASIL mutations D174R R274Q
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3TJO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 293 1.6 M ammonium sulfate, 100 mM Citrate pH 4
Crystal Properties Matthews coefficient Solvent content 2.8 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.42 α = 90 b = 101.42 β = 90 c = 144.94 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2019-06-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.91953 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 47.87 100 0.108 0.111 0.998 15.17 20.611 42814 73.209
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 100 4.094 4.193 0.317 0.84 21.483
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3TJO 2.2 47.87 40654 2159 99.99 0.2474 0.2471 0.2444 0.2533 0.2504 RANDOM 72.121
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -14.41 -14.41 28.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.407 r_dihedral_angle_3_deg 12.752 r_dihedral_angle_4_deg 8.308 r_dihedral_angle_1_deg 3.424 r_angle_refined_deg 0.698 r_angle_other_deg 0.639 r_mcangle_it 0.3 r_mcbond_it 0.155 r_mcbond_other 0.155 r_chiral_restr 0.042
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.407 r_dihedral_angle_3_deg 12.752 r_dihedral_angle_4_deg 8.308 r_dihedral_angle_1_deg 3.424 r_angle_refined_deg 0.698 r_angle_other_deg 0.639 r_mcangle_it 0.3 r_mcbond_it 0.155 r_mcbond_other 0.155 r_chiral_restr 0.042 r_bond_refined_d 0.004 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4555 Nucleic Acid Atoms Solvent Atoms 8 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction PHASER phasing