6Z0H
Structure of TREM2 transmembrane helix K186A variant in DPC micelles
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D HSQC | 500 uM U-2H,U-13C,U-15N TREM2 transmembrane helix in DPC micelles | 95% H2O/5% D2O | 100 mM | 7.0 | 1 atm | 310 | Bruker AVANCE III 600 |
2 | 3D HNCO | 500 uM U-2H,U-13C,U-15N TREM2 transmembrane helix in DPC micelles | 95% H2O/5% D2O | 100 mM | 7.0 | 1 atm | 310 | Bruker AVANCE III 600 |
3 | 3D HNCA | 500 uM U-2H,U-13C,U-15N TREM2 transmembrane helix in DPC micelles | 95% H2O/5% D2O | 100 mM | 7.0 | 1 atm | 310 | Bruker AVANCE III 600 |
4 | 3D HNCACB | 500 uM U-2H,U-13C,U-15N TREM2 transmembrane helix in DPC micelles | 95% H2O/5% D2O | 100 mM | 7.0 | 1 atm | 310 | Bruker AVANCE III 600 |
5 | 3D HN(CO)CA | 500 uM U-2H,U-13C,U-15N TREM2 transmembrane helix in DPC micelles | 95% H2O/5% D2O | 100 mM | 7.0 | 1 atm | 310 | Bruker AVANCE III 600 |
7 | 3D 1H-15N NOESY | 500 uM U-2H,U-13C,U-15N TREM2 transmembrane helix in DPC micelles | 95% H2O/5% D2O | 100 mM | 7.0 | 1 atm | 310 | Bruker AVANCE III 950 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 600 |
2 | Bruker | AVANCE III | 950 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | processing | TopSpin | Bruker Biospin | |
3 | chemical shift assignment | Sparky | Goddard | |
4 | peak picking | Sparky | Goddard | |
5 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
6 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |