6YW8
NMR solution structure of unbound recombinant human Nerve Growth Factor (rhNGF)
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
2 | 2D 1H-15N HSQC | 0.1 mM [U-99% 15N] Nerve Growth Factor, 50 mM HEPES | 90% H2O/10% D2O | 50 mM | 7 | 1 atm | 303 | Agilent VNMRS 800 |
3 | 3D 1H-15N NOESY | 0.1 mM [U-99% 15N] Nerve Growth Factor, 50 mM HEPES | 90% H2O/10% D2O | 50 mM | 7 | 1 atm | 303 | Agilent VNMRS 800 |
1 | 3D HNCA | 0.1 mM [U-99% 13C; U-99% 15N] Nerve Growth Factor, 50 mM HEPES | 90% H2O/10% D2O | 50 mM | 7 | 1 atm | 303 | Agilent VNMRS 800 |
4 | 2D 1H-13C HSQC aliphatic | 0.1 mM [U-99% 13C; U-99% 15N] Nerve Growth Factor, 50 mM HEPES | 90% H2O/10% D2O | 50 mM | 7 | 1 atm | 303 | Agilent VNMRS 800 |
5 | 3D 1H-13C NOESY aliphatic | 0.1 mM [U-99% 13C; U-99% 15N] Nerve Growth Factor, 50 mM HEPES | 90% H2O/10% D2O | 50 mM | 7 | 1 atm | 303 | Agilent VNMRS 800 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Agilent | VNMRS | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | ARIA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (medoid) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | ARIA | 2.3.2 | Rieping W., Habeck M., Bardiaux B., Bernard A., Malliavin T.E., Nilges M. |
2 | structure calculation | ARIA | 2.3.2 | Rieping W., Habeck M., Bardiaux B., Bernard A., Malliavin T.E., Nilges M. |
3 | data analysis | CARA | Keller and Wuthrich | |
4 | peak picking | CARA | Keller and Wuthrich | |
5 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |