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Crystal structure of FAP et pH 8.5 after illumination at 150K
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6YRU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 281 PEG 4000 25-40%, Na citrate 100 mM, spermidine 10mM
Crystal Properties Matthews coefficient Solvent content 3.04 59.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.47 α = 90 b = 104.56 β = 90 c = 156.9 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 150 PIXEL DECTRIS EIGER X 4M 2019-09-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.979 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.82 87 99.7 0.086 0.089 0.999 18.38 13.518 66267 37.236
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.82 1.93 98.2 1.038 1.078 0.816 2.09 13.489
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6YRU 1.824 46.819 66267 3312 99.666 0.16 0.1583 0.1694 0.1881 0.195 33.727
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.011 -0.024 0.013
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.17 r_dihedral_angle_4_deg 16.822 r_dihedral_angle_3_deg 13.923 r_dihedral_angle_1_deg 7.397 r_lrange_it 6.887 r_lrange_other 6.784 r_scangle_it 5.756 r_scangle_other 5.755 r_scbond_it 3.947 r_scbond_other 3.946
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.17 r_dihedral_angle_4_deg 16.822 r_dihedral_angle_3_deg 13.923 r_dihedral_angle_1_deg 7.397 r_lrange_it 6.887 r_lrange_other 6.784 r_scangle_it 5.756 r_scangle_other 5.755 r_scbond_it 3.947 r_scbond_other 3.946 r_mcangle_it 3.632 r_mcangle_other 3.632 r_mcbond_it 2.975 r_mcbond_other 2.973 r_angle_refined_deg 1.728 r_angle_other_deg 1.465 r_symmetry_xyhbond_nbd_refined 0.311 r_symmetry_nbd_refined 0.285 r_nbd_other 0.263 r_symmetry_xyhbond_nbd_other 0.215 r_nbd_refined 0.208 r_symmetry_nbd_other 0.187 r_xyhbond_nbd_refined 0.176 r_nbtor_refined 0.168 r_chiral_restr 0.089 r_symmetry_nbtor_other 0.083 r_bond_refined_d 0.012 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4216 Nucleic Acid Atoms Solvent Atoms 440 Heterogen Atoms 109
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction MOLREP phasing