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Crystal structure of Bacillus subtilis MsmX ATPase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1V43 1V43, 1Q12 experimental model PDB 1Q12 1V43, 1Q12
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 100 mM ammonium sulfate, 100 mM HEPES pH 7.5 and 30% (w/v) polyethylene glycol 400
Crystal Properties Matthews coefficient Solvent content 3.19 61.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.758 α = 90 b = 94.247 β = 90 c = 132.263 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 PIXEL DECTRIS PILATUS3 S 6M 2016-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.9919 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.67 45.93 95 0.999 18 6.5 41647
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.67 1.8 0.518
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1V43, 1Q12 1.68 19.97 38380 2135 65.28 0.1997 0.197 0.2034 0.2495 0.2537 RANDOM 42.441
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.99 r_dihedral_angle_4_deg 21.554 r_dihedral_angle_3_deg 15.12 r_dihedral_angle_1_deg 6.887 r_angle_refined_deg 1.956 r_angle_other_deg 1.032 r_chiral_restr 0.129 r_bond_refined_d 0.02 r_gen_planes_refined 0.01 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.99 r_dihedral_angle_4_deg 21.554 r_dihedral_angle_3_deg 15.12 r_dihedral_angle_1_deg 6.887 r_angle_refined_deg 1.956 r_angle_other_deg 1.032 r_chiral_restr 0.129 r_bond_refined_d 0.02 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2912 Nucleic Acid Atoms Solvent Atoms 257 Heterogen Atoms 15
Software Software Software Name Purpose MxCuBE data collection XDS data reduction STARANISO data scaling Aimless data scaling ARP/wARP model building Coot model building PHASER phasing REFMAC refinement