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CRYSTAL STRUCTURE OF CDK8-CycC IN COMPLEX WITH BI00690300
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4F6S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 298 20% (wt/vol) polyethylene glycol 3350 0.2 M sodium formate
Crystal Properties Matthews coefficient Solvent content 3 58.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.598 α = 90 b = 71.12 β = 90 c = 169.785 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.99988 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.19 84.89 96.1 0.066 13.48 2.8 43086
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.19 2.44 96.9 0.44 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4F6S 2.19 84.89 41621 1460 96.09 0.20161 0.20071 0.2078 0.22679 0.2331 RANDOM 40.457
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.38 -0.18 -0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.658 r_dihedral_angle_4_deg 12.521 r_dihedral_angle_3_deg 11.625 r_long_range_B_refined 7.37 r_long_range_B_other 7.346 r_dihedral_angle_1_deg 5.44 r_scangle_other 4.545 r_mcangle_other 3.643 r_mcangle_it 3.642 r_scbond_it 3.031
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.658 r_dihedral_angle_4_deg 12.521 r_dihedral_angle_3_deg 11.625 r_long_range_B_refined 7.37 r_long_range_B_other 7.346 r_dihedral_angle_1_deg 5.44 r_scangle_other 4.545 r_mcangle_other 3.643 r_mcangle_it 3.642 r_scbond_it 3.031 r_scbond_other 2.983 r_angle_other_deg 2.546 r_mcbond_it 2.366 r_mcbond_other 2.366 r_angle_refined_deg 1.242 r_chiral_restr 0.073 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5081 Nucleic Acid Atoms Solvent Atoms 213 Heterogen Atoms 36
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC refinement MOLREP phasing