6Y07 | pdb_00006y07

Designing a Granulopoietic Protein by Topological Rescaffolding 1: Sohair

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D HNCO	650 uM [U-99% 13C; U-99% 15N] sohair, 50 mM PBS	90% H2O/10% D2O	125 mM	5.2	1 atm	315	Bruker AVANCE III 600
2	3D HNCA	650 uM [U-99% 13C; U-99% 15N] sohair, 50 mM PBS	90% H2O/10% D2O	125 mM	5.2	1 atm	315	Bruker AVANCE III 600
3	3D (H)CC(CO)NH	650 uM [U-99% 13C; U-99% 15N] sohair, 50 mM PBS	90% H2O/10% D2O	125 mM	5.2	1 atm	315	Bruker AVANCE III 600
4	3D H(CCO)NH	650 uM [U-99% 13C; U-99% 15N] sohair, 50 mM PBS	90% H2O/10% D2O	125 mM	5.2	1 atm	315	Bruker AVANCE III 600
5	3D CCH-TOCSY	650 uM [U-99% 13C; U-99% 15N] sohair, 50 mM PBS	90% H2O/10% D2O	125 mM	5.2	1 atm	315	Bruker AVANCE III 600
6	2D NOESY	650 uM [U-99% 13C; U-99% 15N] sohair, 50 mM PBS	90% H2O/10% D2O	125 mM	5.2	1 atm	315	Bruker AVANCE III 800
7	3D CNH-NOESY	650 uM [U-99% 13C; U-99% 15N] sohair, 50 mM PBS	90% H2O/10% D2O	125 mM	5.2	1 atm	315	Bruker AVANCE III 800
8	3D 1H-15N NOESY	650 uM [U-99% 13C; U-99% 15N] sohair, 50 mM PBS	90% H2O/10% D2O	125 mM	5.2	1 atm	315	Bruker AVANCE III 800
9	3D NNH-NOESY	650 uM [U-99% 13C; U-99% 15N] sohair, 50 mM PBS	90% H2O/10% D2O	125 mM	5.2	1 atm	315	Bruker AVANCE III 800

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	600
2	Bruker	AVANCE III	800

NMR Refinement
Method	Details	Software
NOESY back-calculation	see (2019) ElGamacy et al., Structure 27: 853-865.e5	CoMAND

NMR Ensemble Information
Conformer Selection Criteria	back calculated data agree with experimental NOESY spectrum
Conformers Calculated Total Number	20000
Conformers Submitted Total Number	19
Representative Model	1 (medoid)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	data analysis	TopSpin		Bruker Biospin
2	chemical shift assignment	Sparky		Goddard
3	structure calculation	Rosetta		Baker
4	refinement	CoMAND		in house