6XWZ

Carbonic Anhydrase II-mediated hydrolysis of selenolester


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8296solution of 1.5-1.7 M sodium citrate, 0.1 M Tris pH 8.0
Crystal Properties
Matthews coefficientSolvent content
2.141.34

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.336α = 90
b = 41.311β = 104.259
c = 72.457γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2019-07-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONELETTRA BEAMLINE 11.2C1.000ELETTRA11.2C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.3841.3199.80.8911.13150482
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.381.40.82

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTNONE4FIK1.3841.06550452248599.7080.1810.18040.204216.639
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.5740.007-0.2290.708
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.419
r_dihedral_angle_4_deg22.879
r_dihedral_angle_3_deg12.8
r_dihedral_angle_1_deg7.242
r_lrange_other4.538
r_lrange_it4.536
r_scangle_it3.807
r_scangle_other3.806
r_scbond_it2.543
r_scbond_other2.541
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.419
r_dihedral_angle_4_deg22.879
r_dihedral_angle_3_deg12.8
r_dihedral_angle_1_deg7.242
r_lrange_other4.538
r_lrange_it4.536
r_scangle_it3.807
r_scangle_other3.806
r_scbond_it2.543
r_scbond_other2.541
r_mcangle_it2.297
r_mcangle_other2.296
r_angle_refined_deg1.832
r_mcbond_it1.559
r_mcbond_other1.548
r_angle_other_deg1.457
r_symmetry_xyhbond_nbd_refined0.254
r_nbd_refined0.245
r_symmetry_nbd_other0.192
r_xyhbond_nbd_refined0.192
r_nbd_other0.186
r_nbtor_refined0.174
r_symmetry_nbd_refined0.172
r_symmetry_xyhbond_nbd_other0.129
r_chiral_restr0.098
r_symmetry_nbtor_other0.082
r_metal_ion_refined0.036
r_bond_refined_d0.013
r_gen_planes_refined0.012
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2030
Nucleic Acid Atoms
Solvent Atoms168
Heterogen Atoms14

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
Aimlessdata scaling
REFMACphasing