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Human karyopherin RanBP5 (isoform-3)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6XTE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 20 % PEG 3350, 100 mM sodium di-hydrogen phosphate
Crystal Properties Matthews coefficient Solvent content 3.65 66.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.097 α = 90 b = 126.248 β = 90 c = 149.419 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2016-06-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.99987 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.83 48 81 0.074 0.035 0.996 11.2 5.6 200948 35901
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.83 3.06 20.3 1.124 0.503 0.625 1.4 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6XTE 2.834 96.43 35901 1782 81 0.2079 0.206 0.2193 0.2443 0.2181 RANDOM 137.68
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.709 1.9076 0.8014
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 20.84 t_omega_torsion 2.8 t_angle_deg 1.04 t_bond_d 0.009 t_dihedral_angle_d t_gen_planes t_it t_chiral_improper_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8508 Nucleic Acid Atoms Solvent Atoms 14 Heterogen Atoms 12
Software Software Software Name Purpose BUSTER refinement XDS data reduction XSCALE data scaling PHASER phasing