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CutR flat hexamer, form 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6XPK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 10.5 298 2M ammonium sulfate, 0.2M lithium sulfate and 0.1M CAPS/Sodium hydroxide pH 10.5
Crystal Properties Matthews coefficient Solvent content 2.13 42.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.29 α = 90 b = 79.29 β = 90 c = 100.79 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2019-12-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.979300 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 62.32 99.9 0.059 0.061 0.999 23.7 12.954 52024 27.643
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.54 99.3 0.855 0.891 0.86 3.08 12.655
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6XPK 1.5 62.318 52024 5203 99.919 0.163 0.1607 0.1606 0.1841 0.184 20.578
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.129 0.129 -0.258
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.685 r_dihedral_angle_3_deg 13.807 r_dihedral_angle_4_deg 7.695 r_dihedral_angle_1_deg 7.244 r_lrange_it 5.466 r_lrange_other 5.366 r_scangle_it 4.88 r_scangle_other 4.639 r_scbond_it 3.393 r_scbond_other 3.158
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.685 r_dihedral_angle_3_deg 13.807 r_dihedral_angle_4_deg 7.695 r_dihedral_angle_1_deg 7.244 r_lrange_it 5.466 r_lrange_other 5.366 r_scangle_it 4.88 r_scangle_other 4.639 r_scbond_it 3.393 r_scbond_other 3.158 r_mcangle_it 2.257 r_mcangle_other 2.256 r_angle_refined_deg 1.6 r_mcbond_it 1.598 r_mcbond_other 1.597 r_angle_other_deg 1.508 r_nbd_other 0.233 r_nbd_refined 0.201 r_symmetry_nbd_refined 0.182 r_symmetry_nbd_other 0.17 r_nbtor_refined 0.164 r_xyhbond_nbd_refined 0.13 r_symmetry_xyhbond_nbd_refined 0.112 r_symmetry_nbtor_other 0.086 r_chiral_restr 0.078 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2486 Nucleic Acid Atoms Solvent Atoms 200 Heterogen Atoms 20
Software Software Software Name Purpose XDS data reduction XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction