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CutR dimer with domain swap
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4AXI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 0.1M Potassium thiocyanate, 30% w/v PEG 2000
Crystal Properties Matthews coefficient Solvent content 2.1 41.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.29 α = 90 b = 110.29 β = 90 c = 110.29 γ = 90
Symmetry Space Group P 43 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2019-10-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.979200 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 77.541 100 0.079 0.079 1 49.24 75.744 21478 36.863
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 100 1.391 1.401 0.949 4.71 75.197
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4AXI 1.8 77.541 21478 2149 100 0.179 0.1757 0.226 0.2102 0.2484 33.354
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.295 r_dihedral_angle_3_deg 12.251 r_dihedral_angle_4_deg 9.122 r_lrange_other 7.882 r_lrange_it 7.86 r_scangle_it 7.587 r_scangle_other 7.562 r_dihedral_angle_1_deg 7.178 r_scbond_it 5.439 r_scbond_other 5.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.295 r_dihedral_angle_3_deg 12.251 r_dihedral_angle_4_deg 9.122 r_lrange_other 7.882 r_lrange_it 7.86 r_scangle_it 7.587 r_scangle_other 7.562 r_dihedral_angle_1_deg 7.178 r_scbond_it 5.439 r_scbond_other 5.43 r_mcangle_other 3.457 r_mcangle_it 3.43 r_mcbond_it 2.667 r_mcbond_other 2.582 r_angle_other_deg 2.395 r_angle_refined_deg 1.84 r_metal_ion_refined 0.261 r_nbd_refined 0.231 r_symmetry_nbd_other 0.211 r_nbd_other 0.21 r_nbtor_refined 0.17 r_xyhbond_nbd_refined 0.153 r_symmetry_nbd_refined 0.126 r_symmetry_xyhbond_nbd_refined 0.112 r_chiral_restr 0.086 r_symmetry_nbtor_other 0.076 r_bond_other_d 0.036 r_gen_planes_other 0.023 r_bond_refined_d 0.014 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1462 Nucleic Acid Atoms Solvent Atoms 128 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing PDB_EXTRACT data extraction