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Crystal structure of tetra-tandem repeat in extending region of large adhesion protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 5 296 PEG 6000, sodium acetate, sodium chloride
Crystal Properties Matthews coefficient Solvent content 3.3 62.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 202.833 α = 90 b = 45.631 β = 99.994 c = 58.6 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 Ultra-low expansion titanium siliicate flat mirror 2015-06-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 1.7712 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99 0.103 0.107 0.028 0.999 19.6 14.1 35779 17.218
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 87.6 0.471 0.493 0.144 0.99 4.2 11.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 46.63 35778 1769 99.05 0.182 0.1791 0.19 0.2308 0.2375 28.192
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.931 3.106 1.84 -1.887
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.765 r_dihedral_angle_3_deg 10.932 r_dihedral_angle_1_deg 7.116 r_lrange_it 7.105 r_lrange_other 6.806 r_dihedral_angle_4_deg 6.501 r_scangle_it 5.019 r_scangle_other 5.018 r_scbond_it 3.474 r_scbond_other 3.473
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.765 r_dihedral_angle_3_deg 10.932 r_dihedral_angle_1_deg 7.116 r_lrange_it 7.105 r_lrange_other 6.806 r_dihedral_angle_4_deg 6.501 r_scangle_it 5.019 r_scangle_other 5.018 r_scbond_it 3.474 r_scbond_other 3.473 r_mcangle_it 2.76 r_mcangle_other 2.76 r_mcbond_it 2.104 r_mcbond_other 2.092 r_angle_refined_deg 1.642 r_angle_other_deg 1.56 r_nbd_refined 0.217 r_nbd_other 0.205 r_symmetry_nbd_other 0.199 r_xyhbond_nbd_refined 0.179 r_symmetry_xyhbond_nbd_refined 0.178 r_metal_ion_refined 0.157 r_symmetry_nbd_refined 0.148 r_nbtor_refined 0.144 r_symmetry_nbtor_other 0.089 r_symmetry_metal_ion_refined 0.072 r_chiral_restr 0.065 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2638 Nucleic Acid Atoms Solvent Atoms 498 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling AutoSol phasing PHENIX model building Coot model building