6XFL | pdb_00006xfl

Structural characterization of the type III secretion system pilotin-secretin complex InvH-InvG by NMR spectroscopy


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 500
63D HNCO20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 500
23D HNCACB20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 500
33D CBCA(CO)NH20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 500
43D HN(CA)CO20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 500
53D HCCH-TOCSY20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 500
73D HCC(CO)NH-TOCSY20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 500
122D 1H-13C HSQC20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 500
113D HBHA(CBCACO)NH20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 500
103D hbCBcgcdHD20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 500
93D hbCBcgcdceHE20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 500
83D hbCBcgcCH20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 500
213D 1H-13C NOESY20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 500
203D 1H-15N NOESY20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 500
193D 1H-13C NOESY filtered-edited20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 500
183D 1H-15N NOESY filtered-edited20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 500
172D 1H-15N HSQC20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 850
163D HNCO20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 850
153D HNCACB20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 850
313D CBCA(CO)NH20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 850
303D HN(CA)CO20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 500
293D HCCH-TOCSY20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 500
283D HCC(CO)NH-TOCSY20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 500
272D 1H-13C HSQC20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 500
263D HBHA(CBCACO)NH20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 500
253D hbCBcgcdHD20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 500
243D hbCBcgcdceHE20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 500
233D hbCBcgcCH20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 500
223D 1H-13C NOESY aliphatic20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 850
143D 1H-13C NOESY aromatic20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 850
133D 1H-15N NOESY20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 850
333D 1H-13C NOESY filtered-edited20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 500
323D 1H-15N NOESY filtered-edited20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O90% H2O/10% D2O150 mM6.51 atm298Bruker AVANCE 500
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE500
2BrukerAVANCE850
NMR Refinement
MethodDetailsSoftware
simulated annealingCYANA
torsion angle dynamicsCYANA
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (medoid)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCYANA3.98.13Guntert P.
2structure calculationCYANA3.98.13Guntert, Mumenthaler and Wuthrich
3chemical shift assignmentNMRFAM-SPARKYLee W, Tonelli M, Markley JL
4peak pickingNMRFAM-SPARKYLee W, Tonelli M, Markley JL