6XFL

Structural characterization of the type III secretion system pilotin-secretin complex InvH-InvG by NMR spectroscopy

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 500
6	3D HNCO	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 500
2	3D HNCACB	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 500
3	3D CBCA(CO)NH	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 500
4	3D HN(CA)CO	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 500
5	3D HCCH-TOCSY	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 500
7	3D HCC(CO)NH-TOCSY	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 500
12	2D 1H-13C HSQC	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 500
11	3D HBHA(CBCACO)NH	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 500
10	3D hbCBcgcdHD	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 500
9	3D hbCBcgcdceHE	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 500
8	3D hbCBcgcCH	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 500
21	3D 1H-13C NOESY	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 500
20	3D 1H-15N NOESY	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 500
19	3D 1H-13C NOESY filtered-edited	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 500
18	3D 1H-15N NOESY filtered-edited	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 500
17	2D 1H-15N HSQC	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 850
16	3D HNCO	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 850
15	3D HNCACB	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 850
31	3D CBCA(CO)NH	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 850
30	3D HN(CA)CO	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 500
29	3D HCCH-TOCSY	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 500
28	3D HCC(CO)NH-TOCSY	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 500
27	2D 1H-13C HSQC	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 500
26	3D HBHA(CBCACO)NH	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 500
25	3D hbCBcgcdHD	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 500
24	3D hbCBcgcdceHE	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 500
23	3D hbCBcgcCH	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 500
22	3D 1H-13C NOESY aliphatic	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 850
14	3D 1H-13C NOESY aromatic	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 850
13	3D 1H-15N NOESY	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 850
33	3D 1H-13C NOESY filtered-edited	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 500
32	3D 1H-15N NOESY filtered-edited	20 mM NA- MOPS, 150 mM NA- sodium chloride, 0.2 mM NA- TCEP, 10 % v/v NA- D2O	90% H2O/10% D2O	150 mM	6.5	1 atm	298	Bruker AVANCE 500

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	500
2	Bruker	AVANCE	850

NMR Refinement
Method	Details	Software
simulated annealing		CYANA
torsion angle dynamics		CYANA

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (medoid)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	CYANA	3.98.13	Guntert P.
2	structure calculation	CYANA	3.98.13	Guntert, Mumenthaler and Wuthrich
3	chemical shift assignment	NMRFAM-SPARKY		Lee W, Tonelli M, Markley JL
4	peak picking	NMRFAM-SPARKY		Lee W, Tonelli M, Markley JL