Solution NMR Structure of DE NOVO DESIGNED Rossmann 2x3 Fold Protein r2x3_168, Northeast Structural Genomics Consortium (NESG) Target OR386
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 0.6 mM [U-13C; U-15N] OR386 | 90% H2O/10% D2O | 100 mM | 6.5 | 1 atm | 298 | Bruker AVANCE III 800 |
| 2 | 2D 1H-13C HSQC aliphatic | 0.6 mM [U-13C; U-15N] OR386 | 90% H2O/10% D2O | 100 mM | 6.5 | 1 atm | 298 | Bruker AVANCE III 800 |
| 3 | 2D 1H-13C HSQC aromatic | 0.6 mM [U-13C; U-15N] OR386 | 90% H2O/10% D2O | 100 mM | 6.5 | 1 atm | 298 | Bruker AVANCE III 800 |
| 4 | 3D HNCO | 0.6 mM [U-13C; U-15N] OR386 | 90% H2O/10% D2O | 100 mM | 6.5 | 1 atm | 298 | Bruker AVANCE III 800 |
| 5 | 3D HNCACB | 0.6 mM [U-13C; U-15N] OR386 | 90% H2O/10% D2O | 100 mM | 6.5 | 1 atm | 298 | Bruker AVANCE III 800 |
| 6 | 3D CBCA(CO)NH | 0.6 mM [U-13C; U-15N] OR386 | 90% H2O/10% D2O | 100 mM | 6.5 | 1 atm | 298 | Bruker AVANCE III 800 |
| 7 | 3D HCCH-TOCSY | 0.6 mM [U-13C; U-15N] OR386 | 90% H2O/10% D2O | 100 mM | 6.5 | 1 atm | 298 | Bruker AVANCE III 800 |
| 8 | 3D SIMUTANEOUS 1H, 15N, 13C NOESY | 0.6 mM [U-13C; U-15N] OR386 | 90% H2O/10% D2O | 100 mM | 6.5 | 1 atm | 298 | Bruker AVANCE III 800 |
| 9 | 2D 1H-13C HSQC aliphatic | 0.6 mM [U-10% 13C; U-100% 15N] OR386 | 90% H2O/10% D2O | 100 mM | 6.5 | 1 atm | 298 | Bruker AVANCE III 800 |
| 10 | 2D 1H-15N HSQC | 0.6 mM [U-10% 13C; U-100% 15N] OR386 | 90% H2O/10% D2O | 100 mM | 6.5 | 1 atm | 298 | Bruker AVANCE 600 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE III | 800 |
| 2 | Bruker | AVANCE | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | CNS | |
| torsion angle dynamics | CYANA | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
| 2 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
| 5 | structure calculation | ASDP | Huang, Montelione | |
| 3 | chemical shift assignment | AutoAssign | Zimmerman, Moseley, Kulikowski and Montelione | |
| 4 | peak picking | XEASY | Bartels et al. | |
| 6 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |














