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Crystal Structure of Peptidylprolyl Isomerase (PrsA) Fragment from Bacillus anthracis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.3 292 Protein: 7.8 mg/ml, 0.01M Tris pH 8.3;
Screen: Classics II (H11), 0.1M Potassium thiocyanate, 30% (w/v) PEG 2000 MME
Crystal Properties Matthews coefficient Solvent content 1.87 34.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.889 α = 90 b = 107.344 β = 90 c = 31.698 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Be 2020-02-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97856 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.52 30 100 0.061 0.061 0.066 0.025 28.5 7.1 26434 -3 19.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.52 1.55 100 0.723 0.723 0.78 0.289 0.817 2.9 7.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.52 27.31 25087 1301 99.89 0.1722 0.1697 0.17 0.2219 0.2206 RANDOM 23.476
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 0.31 -0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.095 r_dihedral_angle_3_deg 8.884 r_dihedral_angle_1_deg 4.144 r_angle_refined_deg 1.285 r_rigid_bond_restr 0.78 r_angle_other_deg 0.332 r_chiral_restr 0.056 r_gen_planes_refined 0.054 r_gen_planes_other 0.053 r_bond_refined_d 0.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.095 r_dihedral_angle_3_deg 8.884 r_dihedral_angle_1_deg 4.144 r_angle_refined_deg 1.285 r_rigid_bond_restr 0.78 r_angle_other_deg 0.332 r_chiral_restr 0.056 r_gen_planes_refined 0.054 r_gen_planes_other 0.053 r_bond_refined_d 0.004 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1472 Nucleic Acid Atoms Solvent Atoms 162 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing