6XCR
NMR structure of Ost4 in DPC micelles
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 400 uM [U-13C; U-15N] Yeast Oligosaccharyltransferase subunit Ost4, 100 mM DPC micelle | 90% H2O/10% D2O | 400 mM | 6.5 | 1 atm | 308 | Bruker AVANCE 800 |
2 | 3D HNCACB | 400 uM [U-13C; U-15N] Yeast Oligosaccharyltransferase subunit Ost4, 100 mM DPC micelle | 90% H2O/10% D2O | 400 mM | 6.5 | 1 atm | 308 | Bruker AVANCE 800 |
3 | 3D CBCA(CO)NH | 400 uM [U-13C; U-15N] Yeast Oligosaccharyltransferase subunit Ost4, 100 mM DPC micelle | 90% H2O/10% D2O | 400 mM | 6.5 | 1 atm | 308 | Bruker AVANCE 800 |
4 | 3D 1H-15N TOCSY | 400 uM [U-13C; U-15N] Yeast Oligosaccharyltransferase subunit Ost4, 100 mM DPC micelle | 90% H2O/10% D2O | 400 mM | 6.5 | 1 atm | 308 | Bruker AVANCE 800 |
5 | 3D 1H-15N NOESY | 400 uM [U-13C; U-15N] Yeast Oligosaccharyltransferase subunit Ost4, 100 mM DPC micelle | 90% H2O/10% D2O | 400 mM | 6.5 | 1 atm | 308 | Bruker AVANCE 700 |
6 | 3D 1H-15N NOESY | 400 uM [U-13C; U-15N] Yeast Oligosaccharyltransferase subunit Ost4, 100 mM DPC micelle | 90% H2O/10% D2O | 400 mM | 6.5 | 1 atm | 308 | Bruker AVANCE 800 |
7 | 3D HCCH-TOCSY | 400 uM [U-13C; U-15N] Yeast Oligosaccharyltransferase subunit Ost4, 100 mM DPC micelle | 90% H2O/10% D2O | 400 mM | 6.5 | 1 atm | 308 | Bruker AVANCE 600 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
2 | Varian | INOVA | 900 |
3 | Bruker | AVANCE | 700 |
4 | Bruker | AVANCE | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
2 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
3 | chemical shift assignment | NMRFAM-SPARKY | Lee, W., Tonelli, M., and Markley, J. L | |
4 | peak picking | NMRFAM-SPARKY | Lee, W., Tonelli, M., and Markley, J. L | |
5 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |