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Monomer yeast ATP synthase Fo reconstituted in nanodisc with inhibitor of Bedaquiline bound
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6CP7
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 12.432 f_angle_d 1.168 f_chiral_restr 0.062 f_plane_restr 0.008 f_bond_d 0.007
Sample Monomer yeast ATP synthase Fo reconstituted in nanodisc generated in the presence of Bedaquiline
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 47169 Reported Resolution (Å) 4.2 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (6CP7) Refinement Space REAL Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 8
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TALOS ARCTICA Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2 Imaging Mode BRIGHT FIELD Specimen Holder Model GATAN LIQUID NITROGEN Nominal Magnification 36000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION SPIDER 13 PARTICLE SELECTION RELION 1.4 IMAGE ACQUISITION UCSFImage4 4 CTF CORRECTION RELION 2 MODEL FITTING Coot 0.8.1 INITIAL EULER ASSIGNMENT RELION 2 FINAL EULER ASSIGNMENT RELION 1.4 CLASSIFICATION RELION 1.4 RECONSTRUCTION RELION 2 MODEL REFINEMENT PHENIX 1.11.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 541568