6WPD
NMR Structure of HSP1-NH2 antimicrobial peptide in presence of DPC-d38 micelles
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1.0 mM HSP1-NH2 | 90% H2O/10% D2O | 0 | 6.5 | 1 atm | 298 | Bruker AVANCE III 500 |
2 | 2D TOCSY | 1.0 mM HSP1-NH2 | 90% H2O/10% D2O | 0 | 6.5 | 1 atm | 298 | Bruker AVANCE III 500 |
3 | 2D 1H-13C HSQC | 1.0 mM HSP1-NH2 | 90% H2O/10% D2O | 0 | 6.5 | 1 atm | 298 | Bruker AVANCE III 500 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
2 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
3 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
4 | data analysis | PROCHECK / PROCHECK-NMR | Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Thornton | |
5 | data analysis | QUEEN | Nabuurs, Spronk, Krieger, Maassen, Vriend and Vuister |