6WPB
NMR Structure of HSP1-NH2 antimicrobial peptide in presence of SDS-d25 micelles
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D NOESY | 1 mM unlable HSP-1 | 90% H2O/10% D2O | undifined | 6.5 | 1 atm | 298 | Bruker Bruker Avance III 500 |
| 2 | 2D TOCSY | 1 mM unlable HSP-1 | 90% H2O/10% D2O | undifined | 6.5 | 1 atm | 298 | Bruker Bruker Avance III 500 |
| 3 | 2D 1H-13C HSQC aliphatic | 1 mM unlable HSP-1 | 90% H2O/10% D2O | undifined | 6.5 | 1 atm | 298 | Bruker Bruker Avance III 500 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | Bruker Avance III | 500 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | X-PLOR NIH | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (closest to the average) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
| 2 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
| 3 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
| 4 | data analysis | PROCHECK / PROCHECK-NMR | Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Thornton | |
| 5 | data analysis | QUEEN | Nabuurs, Spronk, Krieger, Maassen, Vriend and Vuister | |
