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Crystal structure of human SFPQ/NONO complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4WII
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1 M Tris-HCl (pH 8.5), 0.2 M ammonium sulfate, 19% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.57 52.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.63 α = 90 b = 112.94 β = 90 c = 204.62 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-07-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.954 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.85 68.21 99.5 0.996 10.2 4.7 36690
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.85 2.98 0.627
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4wii 2.85 63.436 36640 1827 99.153 0.238 0.2359 0.2378 0.2826 0.2782 71.47
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.105 3.299 -2.194
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.556 r_dihedral_angle_3_deg 18.262 r_dihedral_angle_4_deg 15.971 r_lrange_it 8.203 r_lrange_other 8.199 r_dihedral_angle_1_deg 5.739 r_scangle_it 5.256 r_scangle_other 5.254 r_mcangle_it 4.794 r_mcangle_other 4.794
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.556 r_dihedral_angle_3_deg 18.262 r_dihedral_angle_4_deg 15.971 r_lrange_it 8.203 r_lrange_other 8.199 r_dihedral_angle_1_deg 5.739 r_scangle_it 5.256 r_scangle_other 5.254 r_mcangle_it 4.794 r_mcangle_other 4.794 r_scbond_it 3.017 r_scbond_other 3.015 r_mcbond_it 2.853 r_mcbond_other 2.852 r_angle_refined_deg 1.241 r_angle_other_deg 1.052 r_nbd_other 0.19 r_symmetry_nbd_other 0.18 r_nbd_refined 0.178 r_nbtor_refined 0.149 r_symmetry_nbd_refined 0.135 r_xyhbond_nbd_refined 0.134 r_symmetry_xyhbond_nbd_refined 0.112 r_symmetry_nbtor_other 0.073 r_chiral_restr 0.043 r_bond_refined_d 0.003 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8914 Nucleic Acid Atoms Solvent Atoms 39 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling PHASER phasing