Experiment: 6WAP

SOLID-STATE NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	Exp1_CORD50ms	100 % [U-13C; U-15N] HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 850
2	Exp2_CORD500ms	100 % [U-13C; U-15N] HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 600
3	Exp3_DARR50ms	100 % [U-13C; U-15N] HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	NHMFL NHMFL 900
4	Exp4_NCA	100 % [U-13C; U-15N] HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 850
5	Exp5_NCA	100 % [U-13C; U-15N] HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	NHMFL NHMFL 900
6	Exp6_NCACX	100 % [U-13C; U-15N] HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 850
7	Exp7_NCACX	100 % [U-13C; U-15N] HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	NHMFL NHMFL 900
8	Exp8_NCOCX	100 % [U-13C; U-15N] HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 850
9	Exp9_NCOCX3d	100 % [U-13C; U-15N] HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 600
10	Exp10_CONCA3d	100 % [U-13C; U-15N] HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 600
11	Exp11_NCACX3d	100 % [U-13C; U-15N] HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	NHMFL NHMFL 900
12	Exp12_NCOCX3d	100 % [U-13C; U-15N] HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	NHMFL NHMFL 900
13	Exp13_CORD10ms	100 % [1,6-13C]-Glucose,U-15N HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 850
14	Exp14_CORD20ms	100 % [1,6-13C]-Glucose,U-15N HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 850
15	Exp15_CORD50ms	100 % [1,6-13C]-Glucose,U-15N HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 850
16	Exp16_CORD100ms	100 % [1,6-13C]-Glucose,U-15N HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 850
17	Exp17_CORD200ms	100 % [1,6-13C]-Glucose,U-15N HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 850
18	Exp18_CORD300ms	100 % [1,6-13C]-Glucose,U-15N HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 850
19	Exp19_CORD400ms	100 % [1,6-13C]-Glucose,U-15N HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 850
20	Exp20_CORD500ms	100 % [1,6-13C]-Glucose,U-15N HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 850
21	Exp21_CORD500ms	100 % [1,6-13C]-Glucose,U-15N HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 600
22	Exp22_NCACX	100 % [1,6-13C]-Glucose,U-15N HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 850
23	Exp23_CORD25ms	100 % [2-13C]-Glucose,U-15N HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 500
24	Exp24_CORD500ms	100 % [2-13C]-Glucose,U-15N HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 500
25	Exp25_CORD500ms	100 % [2-13C]-Glucose,U-15N HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 850
26	Exp26_PAINCP	100 % [2-13C]-Glucose,U-15N HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 850
27	Exp27_CORD25ms	100 % 13C,15N-His HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 600
28	Exp28_R211	100 % 13C,15N-Tyr HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 600
29	Exp29_REDOR1ms	100 % 13C,15N-Tyr HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 600
30	Exp30_REDOR1.6ms	100 % 13C,15N-Tyr HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 600
31	Exp31_REDOR2ms	100 % 13C,15N-Tyr HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 600
32	Exp32_CORD50ms	50 % 13C,15N-Ala HIV-1 capsid protein, 50 % 13C,15N-Ile HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 850
33	Exp33_PDSD1s	50 % 13C,15N-Ala HIV-1 capsid protein, 50 % 13C,15N-Ile HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 850
34	Exp34_CORD50ms	50 % 13C,15N-Ala HIV-1 capsid protein, 50 % 13C,15N-Val HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 850
35	Exp35_CORD500ms	86 % HIV-1 capsid protein, 14 % U-13C,15N-CA HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 600
36	Exp36_NHHC3ms	50 % [U-13C] HIV-1 capsid protein, 50 % [U-15N] HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 850
37	Exp37_NHHC5ms	50 % [U-13C] HIV-1 capsid protein, 50 % [U-15N] HIV-1 capsid protein	solid	2.4 M	6	1 atm	277	Bruker AVANCE III 850

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	850
2	Bruker	AVANCE III	600
3	Bruker	AVANCE III	500
4	NHMFL	NHMFL	900

NMR Refinement
Method	Details	Software
simulated annealing		X-PLOR NIH

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin		Bruker Biospin
2	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3	chemical shift assignment	CcpNmr Analysis		CCPN
4	peak picking	CcpNmr Analysis		CCPN
5	data analysis	Sparky		Goddard
6	structure calculation	TALOS		Cornilescu, Delaglio and Bax
7	structure calculation	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
8	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

6WAP | pdb_00006wap

Atomic-Resolution Structure of HIV-1 Capsid Tubes by Magic Angle Spinning NMR

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.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 6WAP | pdb_00006wap

Atomic-Resolution Structure of HIV-1 Capsid Tubes by Magic Angle Spinning NMR

6WAP | pdb_00006wap