Experiment: 6VWO

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	5KB5	A chains of PDB entries 5KB5, 2A9Y, 3UBO, 2I6A, 2NWH, 4K8P, 3UQ6 and 3EWN
experimental model	PDB	2A9Y	A chains of PDB entries 5KB5, 2A9Y, 3UBO, 2I6A, 2NWH, 4K8P, 3UQ6 and 3EWN
experimental model	PDB	3UBO	A chains of PDB entries 5KB5, 2A9Y, 3UBO, 2I6A, 2NWH, 4K8P, 3UQ6 and 3EWN
experimental model	PDB	2I6A	A chains of PDB entries 5KB5, 2A9Y, 3UBO, 2I6A, 2NWH, 4K8P, 3UQ6 and 3EWN
experimental model	PDB	2NWH	A chains of PDB entries 5KB5, 2A9Y, 3UBO, 2I6A, 2NWH, 4K8P, 3UQ6 and 3EWN
experimental model	PDB	4K8P	A chains of PDB entries 5KB5, 2A9Y, 3UBO, 2I6A, 2NWH, 4K8P, 3UQ6 and 3EWN
experimental model	PDB	3UQ6	A chains of PDB entries 5KB5, 2A9Y, 3UBO, 2I6A, 2NWH, 4K8P, 3UQ6 and 3EWN
experimental model	PDB	3EWN	A chains of PDB entries 5KB5, 2A9Y, 3UBO, 2I6A, 2NWH, 4K8P, 3UQ6 and 3EWN

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	8.9	291	0.1 M TRIS pH 8.9, 15% PEG-4000, 0.2M CaCl2

Crystal Properties
Matthews coefficient	Solvent content
3.11	60.5

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 118.117	α = 90
b = 118.117	β = 90
c = 75.447	γ = 120

Symmetry
Space Group	P 32 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M		2018-06-20	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 24-ID-E	0.97920	APS	24-ID-E

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.78	50	95	0.083	0.086	0.02	6.6	16.6		55162

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.78	1.81	49		0.896	0.979	0.381	0.732		5.2

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Cut-off Sigma (F)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	ensemble	1.78	46.5	1.36	55093	4244	94.99	0.1825	0.1806	0.18	0.2048	0.19	46.0518

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2973
Nucleic Acid Atoms
Solvent Atoms	204
Heterogen Atoms	108

Software

Software
Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing
PDB_EXTRACT	data extraction

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.