6VU1
Cap3G-TAR-F1 is an RNA hairpin. The 1H-1H NOESY data was collected at 308 K in 10 mM KH2PO4 pH 7.4.
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 150 uM Fully protonated Cap3G-TAR-F1, 10 mM Deuterated KH2PO4 | 100% D2O | 10 mM | 7.4 | 1 atm | 308 | Bruker AVANCE 600 |
2 | 2D 1H-1H NOESY | 150 uM Fully protonated Cap3G-TAR-F1, 10 mM Deuterated KH2PO4 | 100% D2O | 10 mM | 7.4 | 1 atm | 308 | Bruker AVANCE 600 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | distance geometry, molecular dynamics | Amber |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | Amber | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman | |
7 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich | |
2 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
3 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
4 | peak picking | NMRView | Johnson, One Moon Scientific | |
5 | processing | NMRFx | Johnson, One Moon Scientific | |
6 | data analysis | NMRView | Johnson, One Moon Scientific |