6VOJ

Chloroplast ATP synthase (R3, CF1FO)


ELECTRON MICROSCOPY

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 6FKI 

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
f_dihedral_angle_d19.5147
f_angle_d0.8943
f_chiral_restr0.0499
f_plane_restr0.0078
f_bond_d0.0048
Sample
Chloroplast ATP synthase
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification InstrumentFEI VITROBOT MARK IV
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles10264
Reported Resolution (Å)4.34
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Point SymmetryC1
Map-Model Fitting and Refinement
Id1 (6FKI)
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K2 SUMMIT (4k x 4k)
Electron Dose (electrons/Å**2)43.5
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)-1500
Maximum Defocus (nm)-2800
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS2.7
Imaging ModeBRIGHT FIELD
Specimen Holder ModelFEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification130000
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
IMAGE ACQUISITIONEPU1.11
CTF CORRECTIONCTFFIND4.1.13
MODEL FITTINGCoot0.9-pre
INITIAL EULER ASSIGNMENTRELION3.1-beta-commit-da823c
FINAL EULER ASSIGNMENTRELION3.1-beta-commit-da823c
CLASSIFICATIONRELION3.1-beta-commit-da823c
RECONSTRUCTIONRELION3.1-beta-commit-da823c
MODEL REFINEMENTPHENIX1.17_3644
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION