X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
othertruncated protein (structure to be published)

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP929325% PEG 1500, 100 mM Bis-Tris Propane pH 9.0, 100 mM NaCl.
Crystal Properties
Matthews coefficientSolvent content
3.3963.73

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 106.488α = 96.13
b = 106.542β = 70.93
c = 117.728γ = 69.52
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 325 mm CCD2014-10-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-ID1APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.18949.89298.70.1050.1170.06415.23.972704
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.1893.2698.90.950.950.6680.3883.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUEtruncated protein (structure to be published)3.18949.89272704353898.2730.220.2180.2586107.401
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.143-2.691-0.342-0.801-1.076-0.977
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.13
r_dihedral_angle_4_deg18.801
r_dihedral_angle_3_deg18.598
r_lrange_it16.959
r_lrange_other16.959
r_scangle_it12.647
r_scangle_other12.645
r_mcangle_it12.251
r_mcangle_other12.251
r_scbond_it8.033
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.13
r_dihedral_angle_4_deg18.801
r_dihedral_angle_3_deg18.598
r_lrange_it16.959
r_lrange_other16.959
r_scangle_it12.647
r_scangle_other12.645
r_mcangle_it12.251
r_mcangle_other12.251
r_scbond_it8.033
r_scbond_other8.031
r_mcbond_it8.025
r_mcbond_other8.025
r_dihedral_angle_1_deg6.97
r_angle_refined_deg1.571
r_angle_other_deg1.514
r_nbd_other0.396
r_symmetry_nbd_refined0.304
r_symmetry_nbd_other0.224
r_nbd_refined0.219
r_nbtor_refined0.18
r_xyhbond_nbd_refined0.136
r_symmetry_xyhbond_nbd_refined0.124
r_ncsr_local_group_30.114
r_ncsr_local_group_50.11
r_ncsr_local_group_20.105
r_ncsr_local_group_40.105
r_ncsr_local_group_60.098
r_chiral_restr0.096
r_symmetry_nbtor_other0.089
r_symmetry_xyhbond_nbd_other0.08
r_ncsr_local_group_10.079
r_ext_dist_refined_d0.067
r_bond_refined_d0.009
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms23683
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing