6UYJ
hRpn13:hRpn2:K48-diubiquitin
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-13C NOESY | 0.6 mM [U-13C] Rpn13, 0.6 mM Rpn2, 0.72 mM [U-13C] proximal ubiquitin, 0.72 mM distal ubiquitin | 100% D2O | 0.11 M | 6.5 | ambient atm | 298.15 | Bruker AVANCE III 900 |
2 | 3D 1H-13C NOESY | 0.6 mM [U-13C] Rpn13, 0.6 mM Rpn2, 0.72 mM [U-13C] proximal ubiquitin, 0.72 mM distal ubiquitin | 100% D2O | 0.11 M | 6.5 | ambient atm | 298.15 | Bruker AVANCE III 900 |
3 | 3D 1H-13C half-filtered NOESY | 0.6 mM [U-13C] Rpn13, 0.6 mM Rpn2, 0.72 mM [U-13C] proximal ubiquitin, 0.72 mM distal ubiquitin | 100% D2O | 0.11 M | 6.5 | ambient atm | 298.15 | Bruker AVANCE III 850 |
4 | 3D 1H-13C half-filtered NOESY | 0.6 mM [U-13C] Rpn13, 0.6 mM Rpn2, 0.72 mM [U-13C] proximal ubiquitin, 0.72 mM distal ubiquitin | 100% D2O | 0.11 M | 6.5 | ambient atm | 298.15 | Bruker AVANCE III 850 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 850 |
2 | Bruker | AVANCE III | 900 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 15 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
2 | data analysis | XEASY | Bartels et al. | |
3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | processing | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |