6UUA

E. coli sigma-S transcription initiation complex with a mismatching CTP ("Fresh" crystal soaked with CTP for 2 hours)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8295PEG3350, sodium chloride, HEPES
Crystal Properties
Matthews coefficientSolvent content
2.6954.25

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 132.964α = 90
b = 153.829β = 90
c = 231.23γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2017-06-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-E0.97918APS24-ID-E

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1447.993.10.9999.225.337926
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
144.2491.30.1090.434.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE5IPL4.00247.89137304181191.5570.3050.30180.3646296.822
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-9.71210.805-1.093
RMS Deviations
KeyRefinement Restraint Deviation
r_lrange_it32.833
r_lrange_other32.833
r_dihedral_angle_2_deg19.62
r_mcangle_it17.849
r_mcangle_other17.849
r_dihedral_angle_3_deg15.899
r_scangle_it13.913
r_scangle_other13.913
r_dihedral_angle_4_deg12.866
r_mcbond_it10.492
RMS Deviations
KeyRefinement Restraint Deviation
r_lrange_it32.833
r_lrange_other32.833
r_dihedral_angle_2_deg19.62
r_mcangle_it17.849
r_mcangle_other17.849
r_dihedral_angle_3_deg15.899
r_scangle_it13.913
r_scangle_other13.913
r_dihedral_angle_4_deg12.866
r_mcbond_it10.492
r_mcbond_other10.492
r_scbond_it7.803
r_scbond_other7.775
r_dihedral_angle_1_deg5.561
r_angle_refined_deg1.176
r_angle_other_deg0.403
r_nbd_other0.383
r_symmetry_xyhbond_nbd_refined0.369
r_symmetry_nbd_refined0.293
r_xyhbond_nbd_refined0.24
r_nbd_refined0.219
r_symmetry_nbd_other0.212
r_metal_ion_refined0.212
r_nbtor_refined0.162
r_symmetry_xyhbond_nbd_other0.134
r_ncsr_local_group_10.112
r_gen_planes_refined0.053
r_gen_planes_other0.048
r_chiral_restr0.043
r_bond_refined_d0.005
r_bond_other_d0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms27572
Nucleic Acid Atoms1356
Solvent Atoms
Heterogen Atoms33

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing