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Crystal structure of ChoE H288N mutant in complex with acetylthiocholine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6UQV PDB entry 6UQV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 6.5 277 15% PEG20000, 0.1 M MES, pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.37 48.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.635 α = 90 b = 81.48 β = 100.16 c = 81.539 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2019-08-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97931 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.57 80.26 97.7 0.061 0.067 0.025 16.9 6.7 79982 79982
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.57 1.65 98.2 0.84 0.84 0.911 0.348 0.9 6.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 6UQV 1.57 36.57 75945 3990 97.59 0.155 0.1536 0.1659 0.183 0.1919 RANDOM 25.123
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.16 0.91 -1.69 -0.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.576 r_dihedral_angle_4_deg 19.016 r_dihedral_angle_3_deg 12.701 r_dihedral_angle_1_deg 6.321 r_angle_refined_deg 1.72 r_angle_other_deg 0.584 r_chiral_restr 0.09 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.576 r_dihedral_angle_4_deg 19.016 r_dihedral_angle_3_deg 12.701 r_dihedral_angle_1_deg 6.321 r_angle_refined_deg 1.72 r_angle_other_deg 0.584 r_chiral_restr 0.09 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4444 Nucleic Acid Atoms Solvent Atoms 617 Heterogen Atoms 32
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction MOLREP phasing