6UFB

Carbonic anhydrase 2 with inhibitor (2Z)-2-benzylidene-3-oxo-N-(4-sulfamoylphenyl)butanamide (11a/D1)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP281200 nL 7 mg/mL protein + 200 nL reservoir solution (2.5-2.8 M ammonium sulfate, 100 mM Tris, pH 8.5-9.0)
Crystal Properties
Matthews coefficientSolvent content
2.0941.19

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.356α = 90
b = 41.485β = 104.528
c = 72.028γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 210r2017-10-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAUSTRALIAN SYNCHROTRON BEAMLINE MX10.953700Australian SynchrotronMX1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6741.4897.30.0910.0360.99917.27.527672
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.671.70.7720.3020.82.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUEPDB entry 4CQ01.6741.03527660141796.910.1520.15060.185914.896
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.031-0.001-0.160.169
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.956
r_dihedral_angle_4_deg21.036
r_dihedral_angle_3_deg13.723
r_dihedral_angle_1_deg7.079
r_lrange_it4.374
r_lrange_other4.374
r_scangle_it2.977
r_scangle_other2.959
r_mcangle_it2.032
r_mcangle_other2.032
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.956
r_dihedral_angle_4_deg21.036
r_dihedral_angle_3_deg13.723
r_dihedral_angle_1_deg7.079
r_lrange_it4.374
r_lrange_other4.374
r_scangle_it2.977
r_scangle_other2.959
r_mcangle_it2.032
r_mcangle_other2.032
r_scbond_it1.885
r_scbond_other1.863
r_angle_refined_deg1.628
r_angle_other_deg1.441
r_mcbond_it1.288
r_mcbond_other1.285
r_symmetry_nbd_refined0.248
r_nbd_refined0.235
r_symmetry_nbd_other0.193
r_nbd_other0.191
r_xyhbond_nbd_refined0.183
r_symmetry_xyhbond_nbd_refined0.179
r_nbtor_refined0.175
r_symmetry_nbtor_other0.079
r_chiral_restr0.078
r_metal_ion_refined0.063
r_bond_refined_d0.01
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2059
Nucleic Acid Atoms
Solvent Atoms258
Heterogen Atoms43

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing