☰ Navigation Tabs
Crystal structure of HaloTag bound to tetramethylrhodamine-HaloTag ligand
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5UY1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.2M MgCl2, 0.1M Tris pH 8.5, 20% PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.38 48.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.53 α = 90 b = 62.53 β = 90 c = 164.169 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-12-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.979 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 58.435 97 0.098 0.108 0.044 11.2 5.8 30022 30022
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 97.6 0.977 0.977 1.071 0.431 0.7 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5UY1 1.8 58.43 28449 1545 96.34 0.1592 0.1573 0.1931 0.2064 RANDOM 28.574
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.62 0.62 -1.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.697 r_dihedral_angle_4_deg 23.779 r_dihedral_angle_3_deg 13.524 r_dihedral_angle_1_deg 6.227 r_angle_refined_deg 2.537 r_angle_other_deg 1.366 r_chiral_restr 0.155 r_bond_refined_d 0.03 r_gen_planes_refined 0.017 r_bond_other_d 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.697 r_dihedral_angle_4_deg 23.779 r_dihedral_angle_3_deg 13.524 r_dihedral_angle_1_deg 6.227 r_angle_refined_deg 2.537 r_angle_other_deg 1.366 r_chiral_restr 0.155 r_bond_refined_d 0.03 r_gen_planes_refined 0.017 r_bond_other_d 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2345 Nucleic Acid Atoms Solvent Atoms 177 Heterogen Atoms 77
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction iMOSFLM data reduction