Solution structure of antimicrobial peptide, crabrolin Plus in the presence of Lipopolysaccharide
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D NOESY | 0.87 mM Crabrolin Plus, mutant of Crabrolin peptide, 14.6 uM Lipopolysaccharide | 95% H2O/5% D2O | 125 mM | 6.1 | 760 mmHg | 300 | Bruker AVANCE 600 |
| 2 | 2D TOCSY | 0.87 mM Crabrolin Plus, mutant of Crabrolin peptide, 14.6 uM Lipopolysaccharide | 95% H2O/5% D2O | 125 mM | 6.1 | 760 mmHg | 300 | Bruker AVANCE 600 |
| 3 | 2D 1H-13C HSQC | 0.87 mM Crabrolin Plus, mutant of Crabrolin peptide, 14.6 uM Lipopolysaccharide | 95% H2O/5% D2O | 125 mM | 6.1 | 760 mmHg | 300 | Bruker AVANCE 600 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| na | ||
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (target function) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 6 | data analysis | CARA | Keller and Wuthrich | |
| 8 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
| 3 | chemical shift assignment | Sparky | Goddard | |
