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Crystal structure of human coxsackievirus A24v in complex with pentavalent inhibitor ME0752
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4Q4W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 200 mM Magnesium chloride, 3.4 M 1,6-Hexanediol, 100 mM HEPES pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 305.475 α = 90 b = 365.351 β = 90 c = 366.484 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2016-05-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97625 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.81 50 99.9 0.993 8.18 7.71 14074225
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.81 1.92 99.4 0.679
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 4Q4w 1.81 49.955 1824194 99.892 0.15 0.1502 29.473
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.084 -0.174 0.091
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.347 r_dihedral_angle_4_deg 15.944 r_dihedral_angle_3_deg 11.624 r_dihedral_angle_1_deg 9.128 r_lrange_it 7.029 r_lrange_other 6.835 r_scangle_it 5.436 r_scangle_other 5.435 r_scbond_other 4.011 r_scbond_it 3.995
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.347 r_dihedral_angle_4_deg 15.944 r_dihedral_angle_3_deg 11.624 r_dihedral_angle_1_deg 9.128 r_lrange_it 7.029 r_lrange_other 6.835 r_scangle_it 5.436 r_scangle_other 5.435 r_scbond_other 4.011 r_scbond_it 3.995 r_mcangle_other 2.59 r_mcangle_it 2.588 r_mcbond_it 1.962 r_mcbond_other 1.96 r_angle_refined_deg 1.381 r_angle_other_deg 1.282 r_xyhbond_nbd_other 0.76 r_symmetry_nbd_refined 0.757 r_nbd_other 0.692 r_nbd_refined 0.18 r_symmetry_xyhbond_nbd_refined 0.171 r_nbtor_refined 0.162 r_symmetry_nbd_other 0.161 r_xyhbond_nbd_refined 0.117 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.065 r_metal_ion_refined 0.029 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6519 Nucleic Acid Atoms Solvent Atoms 816 Heterogen Atoms 67
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling REFMAC phasing