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Crystal structure of the c14 ring of the F1FO ATP synthase from spinach chloroplast
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3V3C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 LIPIDIC CUBIC PHASE 293 0.1 M MES pH 5.8, 1.4 M ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 3.05 59.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.136 α = 90 b = 96.336 β = 106.72 c = 158.684 γ = 90
Symmetry Space Group I 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2015-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.978 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 48.17 96.7 0.192 0.225 0.114 0.993 4.9 3.7 57691
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36 75.6 1.169 1.369 0.704 0.421 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3V3C 2.3 20 54743 2844 96.34 0.2058 0.2042 0.2369 0.233 RANDOM 30.937
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.53 -1.57 3.14 -0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.177 r_dihedral_angle_4_deg 22.208 r_dihedral_angle_3_deg 15.412 r_dihedral_angle_1_deg 4.083 r_angle_other_deg 1.115 r_angle_refined_deg 1.068 r_chiral_restr 0.034 r_bond_refined_d 0.002 r_gen_planes_refined 0.002 r_bond_other_d
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.177 r_dihedral_angle_4_deg 22.208 r_dihedral_angle_3_deg 15.412 r_dihedral_angle_1_deg 4.083 r_angle_other_deg 1.115 r_angle_refined_deg 1.068 r_chiral_restr 0.034 r_bond_refined_d 0.002 r_gen_planes_refined 0.002 r_bond_other_d r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7761 Nucleic Acid Atoms Solvent Atoms 193 Heterogen Atoms 328
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction MOLREP phasing