6TKS

Tankyrase 2 in complex with an inhibitor (OM-1720)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP295.157.5-25% PEG 6000, Bicine, pH=9.0
Crystal Properties
Matthews coefficientSolvent content
2.1642.98

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 41.6α = 90
b = 76.42β = 90
c = 148.19γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 2M2018-10-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE MASSIF-10.96600ESRFMASSIF-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.55098.70.9979.915.39216853
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.52.560.954

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE5NOB2.541.5191685384398.6770.2160.21380.259253.242
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
4.182.219-6.399
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.256
r_dihedral_angle_3_deg15.487
r_dihedral_angle_4_deg15.101
r_dihedral_angle_1_deg6.98
r_lrange_it6.919
r_lrange_other6.918
r_scangle_it4.519
r_scangle_other4.518
r_mcangle_it4.499
r_mcangle_other4.498
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.256
r_dihedral_angle_3_deg15.487
r_dihedral_angle_4_deg15.101
r_dihedral_angle_1_deg6.98
r_lrange_it6.919
r_lrange_other6.918
r_scangle_it4.519
r_scangle_other4.518
r_mcangle_it4.499
r_mcangle_other4.498
r_scbond_it2.741
r_scbond_other2.74
r_mcbond_it2.724
r_mcbond_other2.72
r_chiral_restr_other1.487
r_angle_refined_deg1.293
r_angle_other_deg1.19
r_nbd_other0.264
r_nbd_refined0.178
r_symmetry_nbd_other0.172
r_nbtor_refined0.162
r_symmetry_nbd_refined0.151
r_symmetry_xyhbond_nbd_refined0.115
r_xyhbond_nbd_refined0.108
r_ncsr_local_group_10.09
r_symmetry_nbtor_other0.072
r_chiral_restr0.046
r_symmetry_xyhbond_nbd_other0.009
r_bond_refined_d0.005
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3285
Nucleic Acid Atoms
Solvent Atoms37
Heterogen Atoms78

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing