6TKN

Tankyrase 2 in complex with an inhibitor (OM-1000)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP295.157.5-25% PEG 6000, Bicine pH=9.0
Crystal Properties
Matthews coefficientSolvent content
2.1743.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 41.73α = 90
b = 76.76β = 90
c = 147.91γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2017-10-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID30B0.97625ESRFID30B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.55099.90.9927.646.27917139
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.52.570.616

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE5NOB2.540.1621713985899.8660.2110.2090.248741.077
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.3361.175-2.511
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34
r_dihedral_angle_3_deg15.881
r_dihedral_angle_4_deg14.252
r_lrange_it7.407
r_lrange_other7.401
r_dihedral_angle_1_deg6.838
r_mcangle_it4.887
r_mcangle_other4.887
r_scangle_it4.883
r_scangle_other4.882
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34
r_dihedral_angle_3_deg15.881
r_dihedral_angle_4_deg14.252
r_lrange_it7.407
r_lrange_other7.401
r_dihedral_angle_1_deg6.838
r_mcangle_it4.887
r_mcangle_other4.887
r_scangle_it4.883
r_scangle_other4.882
r_scbond_it2.92
r_scbond_other2.919
r_mcbond_it2.891
r_mcbond_other2.891
r_angle_refined_deg1.782
r_angle_other_deg1.312
r_chiral_restr_other1.045
r_nbd_other0.211
r_symmetry_nbd_refined0.198
r_nbd_refined0.182
r_symmetry_xyhbond_nbd_refined0.178
r_symmetry_nbd_other0.175
r_nbtor_refined0.161
r_xyhbond_nbd_refined0.131
r_ncsr_local_group_10.082
r_symmetry_nbtor_other0.075
r_chiral_restr0.063
r_xyhbond_nbd_other0.011
r_bond_refined_d0.006
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3293
Nucleic Acid Atoms
Solvent Atoms103
Heterogen Atoms66

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing