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CARBOXYPEPTIDASE T WITH N-SULFAMOYL-L-LYSIN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3QNV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 COUNTER-DIFFUSION 273 SA 1.4 M
Crystal Properties Matthews coefficient Solvent content 5.14 76.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 158.05 α = 90 b = 158.05 β = 90 c = 104.391 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2018-07-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 0.8 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.92 30 99.76 0.106 0.115 5.9161 6.88 58676
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.92 2.02 0.37 0.401
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3QNV 1.92 28.89 55688 2966 99.59 0.1473 0.1466 0.1588 0.161 0.1722 RANDOM 13.621
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 0.01 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.643 r_dihedral_angle_4_deg 17.997 r_dihedral_angle_3_deg 12.838 r_dihedral_angle_1_deg 7.36 r_angle_refined_deg 1.899 r_angle_other_deg 1.595 r_chiral_restr 0.101 r_bond_refined_d 0.014 r_gen_planes_refined 0.012 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.643 r_dihedral_angle_4_deg 17.997 r_dihedral_angle_3_deg 12.838 r_dihedral_angle_1_deg 7.36 r_angle_refined_deg 1.899 r_angle_other_deg 1.595 r_chiral_restr 0.101 r_bond_refined_d 0.014 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2581 Nucleic Acid Atoms Solvent Atoms 269 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing PDB_EXTRACT data extraction