6T5O

Bacteroides salyersiae GH164 beta-mannosidase

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	Ammonium tartrate pH 7.0, PEG 3,350

Crystal Properties
Matthews coefficient	Solvent content
2.5	50.89

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 69.151	α = 92.476
b = 103.912	β = 97.336
c = 169.156	γ = 106.426

Symmetry
Space Group	P 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 X 16M		2019-06-30	M	MAD

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04	0.9795	Diamond	I04

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.91	66.847	95.9	0.997	9.4	3.2		332768

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.91	1.94			0.728

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MAD	FREE R-VALUE	1.91	66.847	332570	16536	95.965	0.192	0.1903	0.2207	31.058

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
2.902	1.631	-0.568	0.566	-0.758	-3.93

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	35.348
r_dihedral_angle_4_deg	20.614
r_dihedral_angle_3_deg	14.857
r_dihedral_angle_1_deg	7.357
r_lrange_it	5.62
r_lrange_other	5.599
r_scangle_it	4.534
r_scangle_other	4.534
r_mcangle_other	3.412
r_mcangle_it	3.411
r_scbond_it	3.021
r_scbond_other	3.021
r_mcbond_it	2.452
r_mcbond_other	2.452
r_angle_other_deg	2.305
r_angle_refined_deg	1.401
r_nbd_other	0.256
r_symmetry_nbd_other	0.213
r_nbd_refined	0.201
r_symmetry_nbd_refined	0.198
r_nbtor_refined	0.174
r_symmetry_xyhbond_nbd_refined	0.139
r_xyhbond_nbd_refined	0.137
r_chiral_restr	0.07
r_symmetry_nbtor_other	0.068
r_bond_other_d	0.035
r_symmetry_xyhbond_nbd_other	0.016
r_gen_planes_other	0.01
r_bond_refined_d	0.008
r_gen_planes_refined	0.007

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	31500
Nucleic Acid Atoms
Solvent Atoms	1902
Heterogen Atoms	181

Software

Software
Software Name	Purpose
REFMAC	refinement
xia2	data reduction
DIALS	data scaling
CRANK2	phasing