☰ Navigation Tabs
Bacteroides salyersiae GH164 beta-mannosidase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 Ammonium tartrate pH 7.0, PEG 3,350
Crystal Properties Matthews coefficient Solvent content 2.5 50.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.151 α = 92.476 b = 103.912 β = 97.336 c = 169.156 γ = 106.426
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 16M 2019-06-30 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.91 66.847 95.9 0.997 9.4 3.2 332768
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.91 1.94 0.728
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MAD FREE R-VALUE 1.91 66.847 332570 16536 95.965 0.192 0.1903 0.1905 0.2207 0.2208 31.058
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.902 1.631 -0.568 0.566 -0.758 -3.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.348 r_dihedral_angle_4_deg 20.614 r_dihedral_angle_3_deg 14.857 r_dihedral_angle_1_deg 7.357 r_lrange_it 5.62 r_lrange_other 5.599 r_scangle_it 4.534 r_scangle_other 4.534 r_mcangle_other 3.412 r_mcangle_it 3.411
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.348 r_dihedral_angle_4_deg 20.614 r_dihedral_angle_3_deg 14.857 r_dihedral_angle_1_deg 7.357 r_lrange_it 5.62 r_lrange_other 5.599 r_scangle_it 4.534 r_scangle_other 4.534 r_mcangle_other 3.412 r_mcangle_it 3.411 r_scbond_it 3.021 r_scbond_other 3.021 r_mcbond_it 2.452 r_mcbond_other 2.452 r_angle_other_deg 2.305 r_angle_refined_deg 1.401 r_nbd_other 0.256 r_symmetry_nbd_other 0.213 r_nbd_refined 0.201 r_symmetry_nbd_refined 0.198 r_nbtor_refined 0.174 r_symmetry_xyhbond_nbd_refined 0.139 r_xyhbond_nbd_refined 0.137 r_chiral_restr 0.07 r_symmetry_nbtor_other 0.068 r_bond_other_d 0.035 r_symmetry_xyhbond_nbd_other 0.016 r_gen_planes_other 0.01 r_bond_refined_d 0.008 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 31500 Nucleic Acid Atoms Solvent Atoms 1902 Heterogen Atoms 181
Software Software Software Name Purpose REFMAC refinement xia2 data reduction DIALS data scaling CRANK2 phasing